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References

2015

  • Nikolaou A., Bernardi A., Meneghesso A., Bezzo F., Morosinotto T., and Chachuat B. (2015): A model of chlorophyll fluorescence in microalgae integrating photoproduction, photoinhibition and photoregulation. Journal of Biotechnology 194: pp. 91-99.
  • Perin G., Bellan A., Segalla A., Meneghesso A., Alboressi A. and Morosinotto T. (2015): Generation of random mutants to improve light-use efficiency of Nannochloropsis gaditana cultures for biofuel production. Biotechnology for Biofuels 8: p. 161; DOI 10.1186/s13068-015-0337-5.
  • Zavrel T., Sinetova M.A., Buzova D., Literakova P., and Cerveny J. (2015): Characterization of a model cyanobacterium Synechocystis sp. PCC 6803 autotrophic growth in a flat-panel photobioreactor. Eng. Life Sci. 15: pp. 122–132; doi: 10.1002/elsc.201300165.
  • Ptushenko V. V., Avercheva O. V., Bassarskaya E. M., Berkovich Y. A., Erokhin, A. N., Smolyanina S. O., and Zhigalova, T. V. (2015): Possible reasons of a decline in growth of Chinese cabbage under a combined narrowband red and blue light in comparison with illumination by high-pressure sodium lamp. Scientia Horticulturae, 194: pp. 267-277, doi:10.1016/j.scienta.2015.08.021.
  • Silsbe G.M., Oxborough K., Suggett D.J., Forster R.M., Ihnken S., Komarek O., Lawrenz E., Prasil O., Rottgers R., Sicner M., Simis S.G.H.,Van Dijk M.A., and Kromkamp J.C. (2015): Toward autonomous measurements of photosynthetic electron transport rates: An evaluation of active fluorescence-based measurements of photochemistry. Limnology and Oceanography Methods 13 (3): pp. 138-155; doi: 10.1002/lom3.10014.
  • Humplik J.F., Lazar D., Husickova A. and Spichal L. (2015): Automated phenotyping of plant shoots using imaging methods for analysis of plant stress responses – a review. Plant Methods 11:29, doi:10.1186/s13007-015-0072-8.
  • Beike A.K., Lang D., Zimmer A.D. et al. (2015): Insights from the cold transcriptome of Physcomitrella patens: global specialization pattern of conserved transcriptional regulators and identification of orphan genes involved in cold acclimation. The New Phytologist 205(2): pp. 869-881, doi:10.1111/nph.13004.
  • Vercruyssen L., Tognetti V.B., Gonzalez N. et al. (2015): GROWTH REGULATING FACTOR5 Stimulates Arabidopsis Chloroplast Division, Photosynthesis, and Leaf Longevity.Plant Physiology 167(3): pp. 817-32, doi: 10.1104/pp.114.256180.
  • Dabrowski P., Pawluskiewicz B., Baczewska A. H. et al. (2015): Chlorophyll a fluorescence of perennial ryegrass (Lolium perenneL.) varieties under long term exposure to shade. Zemdirbyste-Agriculture. Volume 102, Pages 305-312. DOI 10.13080/z-a.2015.102.039
  • Dabrowski P., Cetner M. D., Samborska I. A. et al. (2015): Measuring light spectrum as a main indicator of artificial sources quality. Journal of Coastal Life Medicine. Volume 3, Pages 398-404. DOI:10.12980/JCLM.3.2015J5-25

2014

  • Calderon R., Lucena C., Trapero-Casas J. L. et. al. (2014): Soil temperature determines the reaction of olive cultivars to Verticillium dahliae pathotypes. PLoS One. Volume 9. DOI:10.1371/journal.pone.0110664
  • Leal M.C., Jesus B., Ezequiel J., Calado R., Rocha R.J.M., Cartaxana P. and Serodio J. (2014): Concurrent imaging of chlorophyll fluorescence, Chlorophyll a content and green fluorescent proteins-like proteins of symbiotic cnidarians. Marine Ecology 2014: pp. 1-13; doi: 10.1111/maec.12164.
  • Owen M. T. R. (2014): The response of native Australian seedlings to heat and water stress Bachelor of Environmental Science. Institute of Applied Ecology. University of Canberra, ACT 2601, Australia
  • Olubukola Ajigboye O., Murchie E. and Ray R.V. (2014): Foliar application of isopyrazam and epoxiconazole improves photosystem II efficiency, biomass and yield in winter wheat. Pesticide Biochemistry and Physiology 114: pp. 52–60.
  • Aliniaeifard S. and van Meeteren U. (2014): Natural variation in stomatal response to closing stimuli among Arabidopsis thaliana accessions after exposure to low VPD as a tool to recognize the mechanism of disturbed stomatal functioning. Journal of Experimental Botany 65(22): pp. 6529-6542, doi:10.1093/jxb/eru370.
  • Gerin S., Mathy G. and Franck F. (2014): Modeling the dependence of respiration and photosynthesis upon light, acetate, carbon dioxide, nitrate and ammonium in Chlamydomonas reinhardtii using design of experiments and multiple regression. BMC Systems Biology 8: 96.
  • Grama B.S., Chader S., Khelifi D., Agathos S.N., and Jeffryes C. (2014): Induction of canthaxanthin production in a Dactylococcus microalga isolated from the Algerian Sahara. Bioresource Technology 151: pp. 297-305.
  • Kotabova E., Jaresova J., Kana R., Sobotka R., Bina D., and Prasil O. (2014): Novel type of red-shifted chlorophyll a antenna complex from Chromera velia. I. Physiological relevance and functional connection to photosystems. Biochimica et Biophysica Acta 1837: pp. 734–743.
  • Brown T.B., Cheng R., Sirault R.R., Rungrat T., Murray K.D., Trtilek M., Furbank R.T., Badger M., Pogson B.J., and Borevitz J.O. (2014): TraitCapture: genomic and environment modelling of plant phenomic data. Current Opinion in Plant Biology 18: pp. 73-79.
  • Ptushenko V.V., Ptushenko O.S., and Tikhonov A.N. (2014): Chlorophyll fluorescence induction, chlorophyll content, and chromaticity characteristics of leaves as indicators of photosynthetic apparatus senescence in arboreous plants. Biochemistry (Moscow) 79 (3): pp. 260-272; doi 10.1134/S0006297914030122.
  • Armbruster U., Carrillo L.R., Venema K., et al. (2014): Ion antiport accelerates photosynthetic acclimation in fluctuating light environments. Nature Communications 5: 5439, doi:10.1038/ncomms6439.
  • Hida E., Cako V., Babani F. et al. (2014): The Influence of Stress Analyzed By The Emitted Fluorescence Changes. IOSRJEN. 2014; 4(6): 38-43.
  • Hura K., Hura T., Grzesiak M. et al. (2014): Function of the photosynthetic apparatus of oilseed winter rape under elicitation by Phoma lingam phytotoxins in relation to carotenoid and phenolic levels. Acta Physiol Plant. 36: pp. 295–305, doi:10.1007/s11738-013-1410-y.

2013

  • Marteinsson V., Vaishampayan P., Kviderova J., Mapelli F., Medori M., Calfapietra C., Aguilera A., Hamisch D., Reynisson E., Magnusson S., Marasco R., Borin S., Calzada A., Souza-Egipsy V., Gonzalez-Toril E., Amils R., Elster J., and Hansch R. (2013): A laboratory of extremophiles: Iceland Coordination Action for Research Activities on Life in Extreme Environments (CAREX) Field Campaign. Life 3: pp. 211-233.
  • Rousseau C., Belin E., Bove E., et al. (2013): High throughput quantitative phenotyping of plant resistance using chlorophyll fluorescence image analysis. Plant Methods 9: 17, doi:10.1186/1746-4811-9-17.
  • Serodio J., Ezequiel J., Frommlet J., Laviale M. and Lavaud J. (2013): A method for the rapid generation of nonsequential light-response curves of chlorophyll fluorescence. Plant Physiology 163: pp. 1089–1102.
  • Belatik A., Hotchandani S. and Carpentier R. (2013): Inhibition of the water oxidizing complex of Photosystem II and the reoxidation of the quinone acceptor QA− by Pb2+. PLOS ONE 8(7): e68142.
  • Lyska D., Engelmann K., Meierhoff K. et al. (2013): A Gateway-Based Vector System for Adaptive Expression and Flexible Tagging of Proteins in Arabidopsis. PLoS ONE 8(1): e53787, doi:10.1371/journal.pone.0053787.
  • Calderon R., Navas-Cortes J.A., Lucena P.J., and Zarco-Tejada P.J. (2013): High-resolution airborne hyperspectral and thermal imagery for early detection of Verticillium wilt of olive using fluorescence,temperature and narrow-band spectral indices. Remote Sensing of Environment 139: pp. 231–245.
  • Grama B.S., Chader S., Khelifi D., Agathos S.N. and Jeffryes C. (2013): Induction of canthaxanthin production in a Dactylococcus microalga isolated from the Algerian Sahara. Bioresource Technology - in press.
  • Hanson D.T., Green L.E., and Pockman W.T. (2013): Spatio-temporal decoupling of stomatal and mesophyll conductance induced by vein cutting in leaves of Helianthus annuus. Frontiers in Plant Science 4:365, doi:10.3389/fpls.2013.00365.
  • Svubova R., Ovecka M., Pavlovic A. et al. (2013): Cuscuta europaea plastid apparatus in various developmental stages: Localization of THF1 protein. Plant Signaling & Behavior 8(5): e24037, doi:10.4161/psb.24037.
  • Murchie E.H. and Lawson T. (2013): Chlorophyll fluorescence analysis: a guide to good practice and understanding some new applications. J. Exp. Botany 64 (13): pp. 3983–3998, doi:10.1093/jxb/ert208.
  • Fraser J.M., Tulk S.E., Jeans J.A., Campbell D.A., Bibby T.S. and Cockshutt A.M. (2013): Photophysiological and Photosynthetic Complex Changes During Iron Starvation in Synechocystis sp. PCC 6803 and Synechococcus elongatus PCC 7942. PLoS ONE 8(3): e59861, doi:10.1371/journal.pone.0059861, PMID: 23527279.
  • Gawronski P., Gorecka M., Bederska M. et al. (2013): Isochorismate synthase 1 is required for thylakoid organization, optimal plastoquinone redox status, and state transitions in Arabidopsis thaliana. Journal of Experimental Botany 64(12): pp. 3669-3679, doi:10.1093/jxb/ert203.
  • Thomas S. and Campbell D.A. (2013): Photophysiology of Bolidomonas pacifica. Journal of Plankton Research, doi: 10.1093/plankt/fbs105.
  • Dooley F.D., Nair S.P. and Ward P.D. (2013): Increased growth and germination success in plants following hydrogen sulfide administration. PLoS ONE 8(4): e62048. doi:10.1371/journal.pone.0062048.
  • Saburova M., Polikarpov I. and Al-Yamani F. (2013): New records of the genus Gambierdiscus in marginal seas of the Indian Ocean. Marine Biodiversity Records: doi:10.1017/S1755267213000675; Vol. 6; e91.
  • Cerveny J., Sinetova M.A., Valledor L., Sherman L.A., and Nedbal L. (2013): Ultradian metabolic rhythm in the diazotrophic cyanobacterium Cyanothece sp. ATCC 51142. PNAS 110:13210–5. Available at: http://www.pnas.org/content/early/2013/07/19/1301171110.
  • Ferimazova N., Felcmanova K., Setlikova E., Kuepper H., Maldener I., Hauska G., Sediva B. and Prasil O. (2013): Regulation of photosynthesis during heterocyst differentiation in Anabaena sp. strain PCC 7120 investigated in vivo at single-cell level by chlorophyll fluorescence kinetic microscopy. Photosynth Res. DOI 10.1007/s11120-013-9897-z.
  • Krupnik T., Kotabova E., van Bezouwen L.S., Mazur R., Garstka M., Nixon P.J., Barber J., Kana R., Boekema J., and Kargul J. (2013): A reaction centre-dependent photoprotection mechanism in a highly robust photosystem II from an merolae extremophilic red alga Cyanidioschyzon. J. Biol. Chemistry: doi: 10.1074/jbc.M113.484659.
  • Zarco-Tejada P.J., Guillen-Climent M.L., Hernandez-Clemente R., Catalina A., Gonzalez M.R., and Martin, P. (2013): Estimating leaf carotenoid content in vineyards using high resolution hyperspectral imagery acquired from an unmanned aerial vehicle. Agricultural and Forest Meteorology 171-172: pp. 281-294.
  • Ptushenko V.V., Ptushenko E.A, Samoilova O.P. and Tikhonov A.N. (2013): Chlorophyll fluorescence in the leaves of Tradescantia species of different ecological groups: Induction events at different intensities of actinic light. Biosystems 114 (2): pp. 85-97; doi: 10.1016/j.
  • Li X., Zhao W., Sun X., Huang H., et al.(2013): Molecular cloning and characterization of violaxanthin de-epoxidase (CsVDE) in cucumber. PLoS One. 8(5):e64383. doi: 10.1371/journal.pone.0064383.
  • Vredenberg W. and Pavlovic A. (2013): Chlorophyll a fluorescence induction (Kautsky curve) in a Venus flytrap (Dionaea muscipula) leaf after mechanical trigger hair irritation. J. Plant Physiol. 170(3): pp. 242-50, doi: 10.1016/j.jplph.2012.09.009.
  • Ciszewski D., Aleksander-Kwaterczak U., Pociecha A., Szarek-Gwiazda E., Waloszek A., and Wilk-Wozniak E. (2013): Small effects of a large sediment contamination with heavy metals on aquatic organisms in the vicinity of an abandoned lead and zinc mine. Environmental Monitoring and Assessment 185(12): pp. 9825-9842, doi:10.1007/s10661-013-3295-z.
  • Wituszynska W., Galazka K., Rusaczonek A. et al. (2013): Multivariable environmental conditions promote photosynthetic adaptation potential in Arabidopsis thaliana. J. Plant Physiol. 170(6): pp. 548-59, doi: 10.1016/j.jplph.2012.
  • Malasarn D., Kropat J., Hsieh S.I. et al. (2013): Zinc Deficiency Impacts CO2 Assimilation and Disrupts Copper Homeostasis in Chlamydomonas reinhardtii. The Journal of Biological Chemistry 288(15): pp. 10672-10683, doi:10.1074/jbc.M113.455105.
  • Novak J., Pavlu J., Novak O. et al. (2013): High cytokinin levels induce a hypersensitive-like response in tobacco. Ann Bot. 112(1): pp. 41-55, doi: 10.1093/aob/mct092.

2012

  • Wituszynska W., Galazka K., Rusaczonek A., Wanderauwera S., Van Breusegem F., and Karpinski S.(2012): Multivariable environmental conditions promote photosynthetic adaptation potential in Arabidopsis thaliana. J. Plant Physiology: JPLPH-51640; No. of Pages 12.
  • Kovar, M., Veverkova, E. and Cerny, I. (2012): Utilization of Enfrared Thermography and Leaf Reflectance Indices in Evaluation of Effects of the Treatment of Sunflower (Helianthus annuus L.) by Biologically Active Compounds. Acta fytotechnica et zootechnica. Volume 15, Pages 23-28
  • Shrestha S., Brueck H. and Asch F. (2012): Chlorophyll index, photochemical reflectance index and chlorophyll fluorescence measurements of rice leaves supplied with different N levels. Journal of Photochemistry and Photobiology B: Biology. Volume 113, Pages 7–13. DOI:10.1016/j.jphotobiol.2012.04.008
  • Jupa R., Hajek J., Hazdrova J. et al. (2012): Interspecific differences in photosynthetic efficiency and spectral reflectance in two Umbilicaria species from Svalbard during controlled desiccation. Czech Polar Reports, Brno, Volume 2, Pages 31-41. DOI: 10.5817/CPR2012-1-4
  • Sforza E., Simionato D., Giacometti G.M., Bertucco A., Morosinotto T. (2012): Adjusted light and dark cycles can optimize photosynthetic eficiency in algae growing in Photobioreactors. PLoS ONE 7(6): e38975. doi:10.1371/journal.pone.0038975.
  • Labuz J., Sztatelman O., Banas A.K., and Gabrys H. (2012): The expression of phototropins in Arabidopsis leaves: developmental and light regulation. Journal of Exp. Botany 63(4): pp. 1763–1771, doi:10.1093/jxb/ers061.
  • Kana R., Kotabova E., Sobotka R., and Prasil O.(2012): Non-Photochemical quenching in Cryptophyte Alga Rhodomonas salina is located in chlorophyll a/c antennae. PLOS ONE 7 (1): e29700.
  • Quigg A., Kotabova E., Jaresova J., Kana R., Setlik J., Sediva B., Komarek O., and Prasil O.(2012): Photosynthesis in Chromera velia represents a simple system with high efficiency. PLOS ONE 7 (10): e47036.
  • Elster J., Kviderova J., Hajek T., Laska K., and Simek M.(2012): Impact of warming on Nostoc colonies (Cyanobacteria) in a wet hummock meadow, Spitzbergen. Polish Pol. Res. 33: pp. 395-420.
  • Kviderova J.(2012): Photochemical performance of the acidophilic red alga Cyanidium sp. in a pH gradient. Orig. Life Evol. Bios. 42: pp. 223-234.
  • Zarco-Tejada P.J., Gonzales-Dugo V. and Berni J.A.J. (2012): Fluorescence, temperature and narrow-band indices acquired from a UAV platform for water stress detection using a micro-hyperspectral imager and a thermal camera. Remote Sensing of Environment 117: pp. 322-337.
  • Kana R., Kotabova E., Komarek O., Sediva B., Papageorgiou G.C., Govindjee and Prasil O. (2012): The slow S to M fluorescence rise in cyanobacteria is due to a state 2 to state 1 transition. BBA 1817: pp. 1237-1247.
  • Eckert C., Boehm M., Carrieri D. et al. (2012): Genetic Analysis of the Hox Hydrogenase in the Cyanobacterium Synechocystis sp. PCC 6803 Reveals Subunit Roles in Association, Assembly, Maturation, and Function. The Journal of Biological Chemistry 287(52): pp. 43502-43515, doi:10.1074/jbc.M112.392407.
  • Hebbelmann I., Selinski J., Wehmeyer C. et al. (2012): Multiple strategies to prevent oxidative stress in Arabidopsis plants lacking the malate valve enzyme NADP-malate dehydrogenase. Journal of Experimental Botany 63(3): pp. 1445-1459, doi:10.1093/jxb/err386.
  • Porizka P., Prochazka D., Pilat Z., Krajcarova I., Kaiser J., Malina R., Novotny J., Zemanek P. Jezek J., Sery M., Bernatova S., Krzyzanek V., Dobranska K., Novotny K., Trtilek M., and Samek O. (2012): Application of laser-induced breakdown spectroscopy to the analysis of algal biomass for industrial biotechnology. Spectrochim. Acta B (2012), doi:10.1016/j.sab.2012.06.014.
  • Simkova K., Moreau F., Pawlak P., Vriet C., Baruah A., Alexandre C., Hennig L., Apel K., and Laloi C. (2012): Integration of stress-related and reactive oxygen species-mediated signals by Topoisomerase VI in Arabidopsis thaliana. PNAS 1202041109 - in press.
  • Simkova K., Kim C., Gacek K., Baruah A., Laloi C., and Apel K. (2012): The chloroplast division mutant caa33 of Arabidopsis thaliana reveals the crucial impact of chloroplast homeostasis on stress acclimation and retrograde plastid-to-nucleus signaling. Plant J. 69 (4), pp. 701-712.
  • Sinetova M.A., Cerveny J., Zavrel T., and Nedbal L. (2012): On the dynamics and constraints of batch culture growth of the cyanobacterium Cyanothece sp. ATCC 51142. J Biotechnol 162, pp. 148-155. doi: 10.1016/j.jbiotec.2012.04.009.
  • Mishra K.B., Petrozza A., Armentano N., La Vecchia G., Trtilek M., Cellini F., and Nedbal L. (2012): Engineered drought tolerance in tomato plants is reflected in chlorophyll fluorescence emission. Plant Sci. 182: pp. 79-86.

2011

  • Dietzel L., Bräutigam K., Steiner S. et al. (2011): Photosystem II Supercomplex Remodeling Serves as an Entry Mechanism for State Transitions in Arabidopsis. The Plant Cell 23(8): pp. 2964-2977, doi:10.1105/tpc.111.087049.
  • Fiser J., Zitek P. and Cerveny J. (2011): Relay Feedback Oscillator Design for Modeling Circadian Rhythms in Cyanobacteria. In: ASME 2011 International Mechanical Engineering Congress and Exposition, pp. 549-556, Denver, Colorado, USA. doi: 10.1115/IMECE2011-64996.
  • Willig A., Shapiguzov A., Goldschmidt-Clermont M., et al. (2011): The Phosphorylation Status of the Chloroplast Protein Kinase STN7 of Arabidopsis Affects Its Turnover. Plant Physiology 157(4): pp. 2102-2107, doi:10.1104/pp.111.187328.
  • Bauriegel E., Giebel A., Herppich W.B. et al. (2011): Hyperspectral and chlorophyll fluorescence imaging to analyse the impact of Fusarium culmorum on the photosynthetic integrity of infected wheat ears. Sensors (Basel) 11(4): pp. 3765-79, doi: 10.3390/s110403765.
  • Chytyk C., Hucl P. and Gray G. (2011):Leaf photosynthetic properties and biomass accumulation of selected western Canadian spring wheat cultivars. Canadian Journal of Plant Science 91(2): pp. 305-314.
  • Samoilova O.P., Ptushenko V.V., Kuvykin I.V., Kiselev S.A., Ptushenko O.S. and Tikhonov A.N. (2011): Effects of light environment on the induction of chlorophyll fluorescence in leaves: A comparative study of Tradescantia species of different ecotypes. Biosystems 105(1): pp. 41-48.
  • Mishra A., Mishra K.B., Hoermiller I.I., Heyer A.G., and Nedbal L. (2011): Chlorophyll fluorescence emission as a reporter on cold tolerance in Arabidopsis thaliana accessions. Plant Signal Behav. 6(2): pp. 301-310, doi:10.4161/psb.6.2.15278.
  • Peng L. and Shikanai T. (2011): Supercomplex formation with photosystem I is required for the stabilization of the chloroplast NADH dehydrogenase-like complex in Arabidopsis. Plant Physilogy 155: pp. 1629-1639.
  • Knaupp M., Mishra K.B., Nedbal L., and Heyer A.G. (2011): Evidence for a role of raffinose in stabilizing photosystem II during freeze-thaw cycles. Planta 234(3): pp.477-486.
  • Gómez F., Walter N., Amils R., Rull F., Klingelhöfer A.K., Kviderova J., Sarrazin P., Foing B., Behar A., Fleischer I., Parro V., Garcia-Villadangos M., Blake D., Martin Ramos J.D., Direito S., Mahapatra P., Stam C., Venkateswaran K., and Voytek M. (2011): Multidisciplinary integrated field campaign to an acidic Martian Earth analogue with astrobiological interest: Rio Tinto. Int. J. Astrobiol. 10: 291-305.
  • Pavlovic A., Slovakova L., Pandolfi C. and Mancuso S. (2011): On the mechanism underlying photosynthetic limitation upon trigger hair irritation in the carnivorous plant Venus flytrap (Dionaea muscipula Ellis). J. Exp. Botany 62 (6), pp. 1991-2000.
  • Hakala-Yatkin M. and Tyystjarvi E. (2011): Inhibition of Photosystem II by the singlet oxygen sensor compounds TEMP and TEMPD. Biochimica et Biophysica Acta 1807, pp. 243-250.
  • Kviderova J., Elster J., and Simek M. (2011): In situ response of Nostoc commune s.l. colonies to desiccation in Central Svalbard, Norwegian High Arctic. Fottea 11: pp. 87-97.
  • Rantamaki S. and Tyystjarvi E. (2011): Analysis of S2 QA- charge recombination with the Arrhenius, Eyring and Marcus theories. J. Photochem. Photobiol. B 104, pp. 292-300.
  • Ellawala C., Asaeda T., and Kawamura K. (2011): Influence of flow turbulence on Chara fibrosa: growth, stress, and tissue carbon content. J. Freshwater Ecology 26(4): 507–515, doi: 10.1080/02705060.2011.595555.
  • Fernandez-Marin B., Miguez F. , et al. (2011): Activation of violaxanthin cycle in darkness is a common response to different abiotic stresses: a case study in Pelvetia canaliculata. BMC Plant Biology 11: 181, doi:10.1186/1471-2229-11-181.
  • Banas A.K., Labuz J., Sztatelman O., Gabrys H., and Fiedor L. (2011): AExpression of Enzymes Involved in Chlorophyll Catabolism in Arabidopsis Is Light Controlled. Plant Physiology 157(3): pp. 1497-1504, doi:10.1104/pp.111.185504.

2010

  • Work V.H., Radakovits R., Jinkerson R.E. et al. (2010): Increased Lipid Accumulation in the Chlamydomonas reinhardtii sta7-10 Starchless Isoamylase Mutant and Increased Carbohydrate Synthesis in Complemented Strains. Eukaryotic Cell 9(8): pp. 1251-1261, doi:10.1128/EC.00075-10.
  • Fernandez-Marin Becerril J.M. and Garcia-Plazaola J.I. (2010): Unravelling the roles of desiccation-induced xanthophyll cycle activity in darkness: a case study in Lobaria pulmonary. Planta 231, pp. 1335-1342.
  • Cessna S., Demmig-Adams B. and W. Adams III W. (2010): Exploring photosynthesis and plant stress using inexpensive chlorophyll fluorometers. Journal of Natural Resources & Life Sciences Education 39, pp. 22-30.
  • Ruiz-Sanchez M. et al. (2010): The arbuscular mycorrhizal symbiosis enhances the photosynthetic efficiency and the antioxidative response of rice plants subjected to drought stress. J. Plant Physiol. 167(11), pp. 862-869.
  • Piovar J., Stavrou E., Kaducova J., Kimakova T., Backor M. (2010): Influence of long-term exposure to copper on the lichen photobiont Trebouxia erici and the free-living algae Scenedesmus quadricauda. Plant Growth Regulation doi:10.1007/s10725-010-9515-4.
  • Vandamme D., Foubert I., Meesschaert B., Muylaert K. (2010): Flocculation of microalgae using cationic starch. Journal of Applied Phycology 22:525-530.
  • Gao Q.T. and Tam N.F.Y. (2010): Growth, photosynthesis and antioxidant responses of two microalgal species, Chlorella vulgaris and Selenastrum capricornutum, to nonylphenol stress. Chemosphere doi:10.1016.
  • Kviderova J. (2010): Rapid algal toxicity assay using variable chlorophyll fluorescence for Chlorella kessleri (Chlorophyta). Environmental Toxicology (2010) doi:10.1002.
  • Solhaug K.A., Larsson P. and Gauslaa Y. (2010): Light screening in lichen cortices can be quantified by chlorophyll fluorescence techniques for both reflecting and absorbing pigments. Planta 231, pp. 1003-1011.
  • Pavlovic A., Demko V. and Hudak J. (2010): Trap closure and prey retention in Venus flytrap (Dionaea muscipula) temporarily reduces photosynthesis and stimulates respiration. Annals of Botany 105, pp. 37-44.
  • Frolec J., Rebicek J., Lazar D., and Naus J. (2010): Impact of two different types of heat stress on chloroplast movement and fluorescence signal of tobacco leaves. Plant Cell Rep. 29 pp. 705-714.
  • Kviderova J. (2010): Characterization of the community of snow algae and their photochemical performance in situ in the Giant Mountains, Czech Republic. AAAR 42: pp. 210-218.
  • Kviderova J. (2010): Rapid algal toxicity assay using variable chlorophyll fluorescence for Chlorella kesslerii (Chlorophyta). Environ. Toxicol. 25: pp. 554-563.
  • Codrea M.C., Hakala-Yatkin M., Karlund-Marttila A., Nedbal L., Aittokallio T. and Tyystjarvi E. (2010): Mahalanobis distance screening of Arabidopsis mutants with chlorophyll fluorescence. Photosynth. Res. 105, pp. 273-283.
  • Nedbal L., Cerveny J., Keren N. and Kaplan A. (2010): Experimental validation of a nonequilibrium model of CO2 fluxes between gas, liquid medium, and algae in a flat-panel photobioreactor. J. Ind. Microbiol. Biotechnol. 37, pp. 1319-1326.

2009

  • Allahverdiyeva Y., Mamedov F., Holmstrom M., Nurmi M., Lundin B., Styring S., Spetea C. and Aro E.M. (2009): Comparison of the electron transport properties of the psbo1 and psbo2 mutants of Arabidopsis thaliana. BBA 1787, pp. 1230-1237.
  • Thapper A., Mamedov F., Mokvist F., Hammarstrom L. and Styring S. (2009): Defining the Far-Red Limit of Photosystem II in Spinach. Plant Cell 21, pp. 2391–2401.
  • Pan X., Chen X., Zhang D., Wang J., Deng C., Mu G. and Zhu H. (2009): Effect of chromium (VI) on Photosystem II activity and heterogeneity of Synechocystis sp. (Cyanophyta): studied with in vivo chlorophyll fluorescence tests. J. Phycol. 45, pp. 386–394.
  • Kana R., Prasil O., Komarek O., Papageorgiou G.C. and Govindjee (2009): Spectral characteristic of fluorescence induction in a model cyanobacterium, Synechococcus sp. (PCC 7942). BBA 1787, pp. 1170-1178.
  • Harding S.A. et al. (2009): A comparative analysis of phenylpropanoid metabolism, N utilization, and carbon partitioning in fast- and slow-growing Populus hybrid clones. J. Exp. Botany 60, pp. 3443-3452.
  • Mishra A., Matous K., Mishra K.B., and Nedbal L. (2009): Towards discrimination of plant species by machine vision: advanced statistical analysis of chlorophyll fluorescence transients. J. Fluoresc. 19 (5), pp. 905-913.
  • Baruah A., Simkova K., Apel K., and Laloi C. (2009): Arabidopsis mutants reveal multiple singlet oxygen signaling pathways involved in stress response and development. Plant Mol. Biol. 70 (5), pp. 547-563.
  • Posten C. (2009): Design principles of photo-bioreactors for cultivation of microalgae. Eng. Life Sci. 9 (3), pp. 165-177.
  • Baruah A., Simkova K., Hincha D.K. et al. (2009): Modulation of O2 -mediated retrograde signaling by the PLEIOTROPIC RESPONSE LOCUS 1 (PRL1) protein, a central integrator of stress and energy signaling. The Plant Journal 60: pp. 22–32, doi: 10.1111/j.1365-313X.2009.03935.
  • Cerveny J., Setlik I., Trtilek M., and Nedbal L. (2009): Photobioreactor for cultivation and real-time, in-situ measurement of O2 and CO2 exchange rates, growth dynamics, and of chlorophyll fluorescence emission of photoautotrophic microorganisms. Eng. Life Sci. 9 (3), pp. 247-253.
  • Harding S.A., Jarvie M.M., Lindroth R.L. and Tsai Ch-J. (2009): A comparative analysis of phenylpropanoid metabolism, N utilization, and carbon partitioning in fast- and slow-growing Populus hybrid clones. J. Exp. Botany, Vol. 60 (12), pp. 3443-3452.
  • Pollari M., Ruotsalainen V., Rantamaki S., Tyystjarvi E. and Tyystjarvi T.(2009): Simultaneous inactivation of sigma factors B and D interferes with light acclimation of the cyanobacterium Synechocystis sp. strain PCC 6803. J. of Bacteriology, Vol. 191 (12), pp. 3992-4001.
  • Cerveny J. and Nedbal L. (2009): Metabolic rhythms of the cyanobacterium Cyanothece sp. ATCC 51142 correlate with modeled dynamics of circadian clock. J. Biol. Rhythms, Vol. 24 (4), pp. 295-303.
  • Rocchetta I. and Kuepper H. (2009): Chromium and copper induced inhibition of photosynthesis in Euglena gracilis analysed on the single-cell level by fluorescence kinetic microscopy. New Phytologist 182, pp. 405-420.
  • Kuepper H., Andresen E., Wiegert S., Simek M., Leitenmaier B. and Setlik I. (2009): Reversible coupling of individual phycobiliprotein isoforms during state transitions in the cyanobacterium Trichodesmium analysed by single-cell fluorescence kinetic measurements. BBA (Bioenergetics) 1787, pp. 155-167.
  • Kuepper H., Mijovilovich A., Goetz B., Kuepper F.C., and Meyer-Klaucke W. (2009): Complexation and toxicity of copper in higher plants (I): Characterisation of copper accumulation, speciation and toxicity in Crassula helmsii as a new copper hyperaccumulator. Plant Physiol., DOI:10.1104/pp.109.139717.
  • Mijovilovich A., Leitenmaier B., Meyer-Klaucke W., Kroneck P.M.H., Goetz B., and Kuepper H. (2009): Complexation and toxicity of copper in higher plants (II): Different mechanisms for Cu vs. Cd detoxification in the Cu-sensitive Cd/Zn hyperaccumulator Thlaspi caerulescens (Ganges ecotype). Plant Physiol., DOI: 10.1104/pp.109.144675.
  • Andresen E., Lohscheider J., Setlikova E., Adamska I., Simek M., and Kuepper H. (2009): Acclimation of Trichodesmium erythraeum ISM101 to high and low irradiance analysed on the physiological, biophysical and biochemical level. New Phytologist, pp.
  • Zhang M., Wang H., and Yu C. (2009): The examination of high temperature stress of Ammopiptanthus mongolicus by chlorophyll fluorescence induction parameters. Ecology and Environm. Sciences 18 (6), pp. 2272-2277.
  • Kuvykin I.V. et al. (2009): Computer simulation study of pH-dependent regulation of electron transport in chloroplasts. Cell Biophysics 54 (4), pp. 455-464.
  • Macek P., Mackova J. and de Bello F. (2009): Morphological and ecophysiological traits shaping altitudinal distribution of three Polylepis treeline species in the dry tropical Andes. Acta Oecologica 35, pp. 778-785.
  • Rosescu M.R. and Andrei M. (2009): The study of photosystem II efficiency on selected synanthropic plant species. Annals, Food Science and Technology 10, pp. 115-119.

2008

  • Klem K. and Bajerova E. (2008): Adjustment of herbicide dose in sugar beet based on non-invasive chlorophyll fluorescence measurements. AgEng 2008 Conference, Hersonissos, Crete.
  • Woo N.S, Badger M.R. and Pogson B.J. (2008): A rapid, non-invasive procedure for quantitative assessment of drought survival using chlorophyll fluorescence. Plant Methods 4 (27).
  • Klem K. (2008): Prediction of spring barley nutrition state and grain quality using spectral reflectance and chlorophyll fluorescence. Precision Agriculture - ICPA 2008.
  • Kuepper H., Setlik I., Seibert S., Prasil O., Setlikova E., Strittmatter M., Levitan O., Lohscheider J., Adamska I., and Bergman-Frank I. (2008): Iron limitation in the marine cyanobacterium Trichodesmium reveals new insights into regulation of photosynthesis and nitrogen fixation. New Phytol. 179, pp. 784-798.
  • Nedbal L., Trtilek M., Cerveny J., Komarek O., and Pakrasi H.B. (2008): A Photobioreactor system for precision cultivation of photoautotrophic microorganisms and for high-content analysis of suspension dynamics. Biotechnol. Bioengineering Vol. 100 (5), pp. 902-910.
  • Chi W., Ma J., Zhang D., Guo J., Chen F., Lu C. and Zhang L. (2008): The pentratricopeptide repeat protein delayed greening is involved in the regulation of early chloroplast development and chloroplast gene expression in Arabidopsis. Plant Physiol. 147, pp. 573-584.
  • Pan X., Deng C., Zhang D., Wang J., Guijin M., and Chen Y. (2008): Toxic effects of amoxicillin on the photosystem II of Synechocystis sp. characterized by a variety of in vivo chlorophyll fluorescence tests. Aquatic Toxicology 2008.
  • Allahverdiyeva Y., Sairanen I., Stensjö K., Lindblad P., and Aro E.M. (2008): Photosynthetic electron transport properties of an uptake hydrogenase deletion mutant of Nostoc punctiforme PCC 73102. In: Photosynthesis. Energy from the Sun, pp. 3-5.
  • Odrowaz Piramowicz M., Bock R., Orzechowska A., Strzałka K., and Burda K. (2008): Binding sites of cadmium ions within Photosystem II. In: Photosynthesis. Energy from the Sun, pp. 305-308.
  • Thapper A., Mamedov F., and Styring S. (2008): IR-induced photochemistry in Photosystem II. In: Photosynthesis. Energy from the Sun, pp. 522-524.
  • Binal D., Litvin R., and Vacha F. (2008): Relationship of the in vivo bacteriochlorophyll fluorescence and the state of the photosynthetic apparatus in purple bacteria. In: Photosynthesis. Energy from the Sun, pp. 559-562.
  • Burda K., Schöttler M.A., Orzechowska A., Kruk J. Strzałka K., and Bock R. (2008): Regulatory function of cytochrome b559 in Photosystem II. In: Photosynthesis. Energy from the Sun, pp. 305-308.
  • Higuchi M., Matsui K., Ichikawa T., Kondou Y., Hasegawa Y., Kawashima M, Hirochika H., and Matsui M. (2008): Identification of photosynthesis-related genes in rice using FOX hunting system. In: Photosynthesis. Energy from the Sun, pp. 597-600.
  • Orzechowska A., Bock R., Odrowaz Piramowicz M., Strzałka K., and Burda K. (2008): Cu2+ Binding Sites in PSII. In: Photosynthesis. Energy from the Sun, pp. 661-664.
  • Oh M.H., Park T.S., Yang W.H., Kwak K.S., Shin J.C., Safarova R.B., Eu Y.J., Paek N.C., Leeb C.H., and Choi K.J. (2008): Leaf senescence in a stay-green rice variety, SNU-SG1, and a mutant, sgr. In: Photosynthesis. Energy from the Sun, pp. 1515-1518.
  • Rohacek K., Kloz M., Bina D., Batysta F., and Vacha F. (2008): Investigation of non-photochemical processes in photosynthetic bacteria and higher plants using interference of coherent radiation – a novel approach. In: Photosynthesis. Energy from the Sun, pp. 1549-1552.
  • Kos P.B., Deak Z., Cheregi O., and Vass I. (2008): Light induced exchange of different psbA gene copies in the cyanobacterium thermosynechococcus elongatus. In: Photosynthesis. Energy from the Sun, pp. 39-42.
  • Cser K. and Vass I. (2008): Regulation of photoprotection by non-radiative charge recombination in Photosystem II. In: Photosynthesis. Energy from the Sun, pp. 47-50.
  • Vass I., Cser K., Telfer A., Benson S.L., Barber J., and Deak Z. (2008): Energetics of Photosystem II charge recombination in acaryochloris marina studied by thermoluminescence and flash induced chlorophyll fluorescence measurements. In: Photosynthesis. Energy from the Sun, pp. 231-234.
  • Hamilton M., Franco E., Deak Z., Vass I., and Nixon P. (2008): Cytochrome b-559 is important for modulating electron transfer on the acceptor side of Photosystem II and for photoprotection during assembly of the Mn4Ca complex. In: Photosynthesis. Energy from the Sun, pp. 413-417.
  • Deak Z. and Vass I. (2008): Oscillating yield of flash-induced chlorophyll fluorescence decay in intact cells of thermosynechococcus elongatus. In: Photosynthesis. Energy from the Sun, pp. 573-576.
  • Ido K., Ifuku K., Ishihara S., Yamamoto Y., Miyake C., and Sato F. (2008): Effects of PsbP knockdown on the photosynthetic electron transfer in nicotiana tabacum. In: Photosynthesis. Energy from the Sun, pp. 605-608.
  • Zhang P., Sicora1 C.I., Vorontsova N., Allahverdiyeva Y., Battchikova N., Nixon P.J., and Aro E.M. (2008): Expression of inducible inorganic carbon acquisition complexes is under the control of the FtsH protease in synechocystis sp. PCC 6803. In: Photosynthesis. Energy from the Sun, pp. 829-833.
  • Soukupova J., Csefalvay L., Urban O., Kosvancova M., Marek M., Rascher U., and Nedbal L. (2008): Annual variation of the steady-state chlorophyll fluorescence emission of evergreen plants in temperate zone. Biotechnol. Bioengineering Vol. 35, pp. 1-14.

2007

  • Masclaux-Daubresse C., Purdy S., Lemaitre T. et al. (2007): Genetic Variation Suggests Interaction between Cold Acclimation and Metabolic Regulation of Leaf Senescence. Plant Physiology 143: pp. 434–446.
  • Mamedov F., Nowaczyk M.M., Thapper A., Roegner M. and Styring S. (2007): Functional Characterization of Monomeric Photosystem II Core Preparations from Thermosynechococcus elongatus with or without the Psb27 Protein. Biochemistry, No. 46, pp. 5542-5551.
  • Allahverdiyeva Y., Mamedov F., Suorsa M., Styring S., Vass I. and Aro E.M. (2007): Insights into the function of PsbR protein in Arabidopsis thaliana. BBA 1767, pp. 677-685.
  • Van Hoewyk D., Abdel-Ghany S.E., Cohu C.M. et al. (2007): Chloroplast iron-sulfur cluster protein maturation requires the essential cysteine desulfurase CpNifS. Proceedings of the National Academy of Sciences of the United States of America 104(13): pp. 5686-5691, doi:10.1073/pnas.0700774104.
  • Bartak M., Vaczi P., Hajek J., and Smykla J. (2007): Low-temperature limitation of primary photosynthetic processes in Antarctic lichens Umbilicaria antarctica and Xanthoria elegans. Polar Biol. Vol. 31, No. 1, pp. 47-51.
  • Miura E., Kato Y., Matsushima R., Albrecht V., Soumaya L., and Sakamoto W. (2007): The balance between protein synthesis and degradation in chloroplasts determines leaf variegation in Arabidopsis yellow variegated mutants. Plant Cell 19, pp. 1313-1328.
  • Ozaki H., Ikeuchi M., Ogawa T., Fukuzawa H., and Sonoike K. (2007): Large scale analysis of chlorophyll fluorescence kinetics in Synechocystis sp. PCC 6803: Identification of the factors involved in the modulation of photosystem stoichiometry. Plant Cell Physiol. 17284470 (P.S.E.B.).
  • Kuepper H., Aravind P., Leitenmaier B., Trtilek M. and Setlik I. (2007): Cadmium-induced inhibition of photosynthesis and long-term acclimation to Cd-stress in the Cd hyperaccumulator Thlaspi caerulescens. New Phytologist Vol. 175(4), pp. 655-674.
  • Hogewoning S.W. and Harbinson J. (2007): Insights on the development, kinetics, and variation of photoinhibition using chlorophyll fluorescence imaging of a chilled, variegated leaf. J. Exp. Botany Vol. 58, No. 3, pp. 453-463.
  • Vacha F., Sarafis V., Benediktyova Z., Bumba L., Valenta J., Vacha M., Sheue Ch.-R. and Nedbal L. (2007): Identification of PSI and PSII enriched regions of thylakoid membrane by optical microimaging of cryo-fluorescence emission spectra and of variable fluorescence. Micron 38: 170-175.
  • Berger S., Benediktyova Z., Matous K., Bonfig K., Mueller M.J., Nedbal L. and Roitsch T. (2007): Visualization of dynamics of plant-patogen interaction by novel combination of chlorophyll fluorescence imagin and statistical analysis: Differential effects of virulent and avirulent strains of P. syringae and of oxylipins on A. thaliana. J. Exp. Bot. 58 (4), pp. 797-806.

2006

  • Pfalz J., Liere K., Kandlbinder A., Dietz K.-J., and Oelmueller R. (2006): pTAC2, -6, and -12 are components of the transcriptionally active plastid chromosome that are required for plastid gene expression. Plant Cell 18, pp. 176-197.
  • Matous K., Benediktyova Z., Berger S., Roitsch T., and Nedbal L. (2006): Case study of combinatorial imaging: What protocol and what chlorophyll fluorescence image to use when visualizing infection of Arabidopsis thaliana by Pseudomonas syringae? Photosynth. Res. 90 (3), pp. 243-253.
  • Vaczi P. and Bartak M. (2006): Photosynthesis of lichen symbiotic alga Trebouxia erici as affected by irradiance and osmotic stress. Biol. Plant. 50 (2), pp. 257-264.
  • Hajek J., Bartak M. and Dubova J. (2006): Inhibition of photosynthetic processes in foliose lichens induced by temperature and osmotic stress. Biol. Plant. 50 (4), pp. 624-634.
  • Gachon C.M.M., Kuepper H., Kuepper F.C. and Setlik I. (2006): Witnessing effects of a pathogen on photosynthesis of its host at the cellular level: chlorophyll fluorescence kinetic microscopy of Pylaiella littoralis (Phaeophyceae)infected by Chytridium polysiphoniae (Chytridiomycota). European Journal of Phycology 41, pp. 395-403.
  • Pfalz J., Liere K., Kandlbinder A., Dietz K.J. and Oelmuller R. (2006): pTAC2, -6, and -12 are components of the transcriptionally active plastid chromosome that are required for plastid gene expression. Plant Cell 18, pp. 176-197.
  • Zabka M., Drastichova K., Jegorov A., Soukupova J. and Nedbal L. (2006): Direct evidence of plant-pathogenic activity of fungal metabolites of Trichothecium roseum on apple. Mycopathologia 162 (1), pp. 65-68.
  • Shlyk-Kerner O., Samish I., Kaftan D., Holland N., P. S. Sai M., Kless H. and Scherz A .(2006): Protein flexibility acclimatizes photosynthetic energy conversion to the ambient temperature. Nature 442, pp. 827-830.
  • Bartak M., Solhaug K.A., Vrablikova H. and Gauslaa Y. (2006): Curling during desiccation protects the foliose lichen Lobaria pulmonaria against photoinhibition. Ecophysiology Vol. 149, No. 4, pp. 553-560.
  • Hill R. and Ralph P. (2006): Photosystem II heterogeneity of in hospite zooxanthellae in scleractinian corals exposed to bleaching conditions. Photochem. Photobiol. 82 (6), pp. 1577-1585.
  • Cepak V., Pribyl P., Kviderova J., and Lukavsky J. (2006): Comparative study of zooid and non-zooid forming strains of Scecnedesmus obliquus. Physiology and Cytomorphology. Folia Microbiol. 51: pp. 349-356.
  • Lazar D. (2006): The polyphasic chlorophyll a fluorescence rise measured under high intensity of exciting light. Functional Plant Biology 33 (1), pp. 9-30.

2005

  • Keren N., Liberton M. and Pakrasi H.B. (2005): Photochemical competence of assembled Photosystem II core complex in cyanobacterial plasma membrane. J. Biol. Chem., Vol. 280, No. 8, pp. 6548-6553.
  • Obenland D. and Neipp P. (2005): Chlorophyll Fluorescence Imaging Allows Early Detection and Localization of Lemon Rind Injury following Hot Water Treatment. HortScience 40(6): pp. 1821-1823.
  • Kviderova J., Stibal M., Nedbalova L., and Kastovska K. (2005): The first record of snow algae vitality in situ by variable fluorescence of chlorophyll. Czech Phycol. 5: pp. 69-77.
  • Allahverdiyeva Y., Mamedov F., Maenpaa P., Vass I. and Aro E.M.(2005): Modulation of photosynthetic electron transport in the absence of terminal electron acceptors: Characterization of the rbcL deletion mutant of tobacco. BBA 1709, pp. 69-83.
  • Diaz C., Purdy S., Christ A., Morot-Gaudry J.F., Wingler A., and Masclaux-aubresse C. (2005): Characterization of markers to determine the extent and variability of leaf senescense in arabidopsis. A metabolic profiling approach. Plant Physiology, Vol. 138, pp. 898-908.
  • Nedbal L., Brezina V., Cerveny J. and Trtilek M. (2005): Photosynthesis in dynamic light: Systems biology of unconventional chlorophyll fluorescence transients in Synechocystis sp.PCC6803. Photosynth. Res. 84, 99-106.
  • Koblizek M., Ston-Egiert J., Sagan S., and Kolber Z.S. (2005): Diel changes in bacteriochlorophyll a concentration suggest rapid bacterioplankton cycling in the Baltic Sea. FEMS Microbiology Ecology 51 (3), 353–361.
  • Setlikova E., Setlik I., Kuepper H., Kasalicky V. and Prasil O. (2005): The photosynthesis of individual algal cells during the cell cycle of Scenedesmus quadricauda studied by chlorophyll fluorescence kinetic microscopy. Photosynthesis Research 84, pp. 113-120.
  • Leeuwe M.A., vanSikkelerus B., Gieskes W.W.C. and Stefels J. (2005): Taxon-specific differences in photoacclimation to fluctuating irradiance in an Antarctic diatom and a green flagellate. Mar. Ecol. Prog. Ser., Vol. 288, pp. 9-19.
  • Baerr J.N., Thomas J.D., Taylor B.G., Roderme S.R. and Gray G.R. (2005): Differential photosynthetic compensatory mechanisms exist in the immutans mutant of Arabidopsis thaliana. Physiol. Plantarum, Vol. 124, p. 390.
  • Thornton L.E., Keren N., Ohad I. and Pakrasi H.B. (2005): Physcomitrella patens and Ceratodon purpureus, mosses and model organisms in photosynthesis studies. Photosynthesis Research, Vol. 83, pp. 87-96.
  • Inoue-Kashino N., Kashino Y., Satoh K., Terashima I. and Pakrasi H.B. (2005): PsbU provides a stable architecture for the oxygen-evolving system in cyanobacterial Photosystem II. Biochemistry, Vol. 44, pp. 12214-12228.
  • Adamec F., Kaftan D., and Nedbal L. (2005): Stress-induced filament fragmentation of Calothrix elenkinii (cyanobacteria) is facilitated by death of high-fluorescence cells. J. Phycol. 41, p. 835.
  • Fujimori T., Higuchi M., Sato H., Aiba H., Muramatsu M., Hihara Y. and Sonoike K. (2005): The mutant of sll1961, which encodes a putative transcriptional regulator, has a defect in regulation of photosystem stochiometry in the cyanobacterium Synechocystis sp. PCC 6803. Plant Physiol. 139, pp. 408-416.
  • Wingler A., Brownhill E. and Pourtau N. (2005): Mechanisms of the light-dependent induction of cell death in tobacco plants with delayed senescence. J. Exp. Botany, Vol. 56, pp. 2897-2905.
  • Vacha F., Bumba L., Kaftan D., et al. (2005): Microscopy and single molecule detection in photosynthesis. Micron 36 (6), pp. 483-502.
  • Babusnik J., Vanova M., Placha E., Jarosik V., Ondrej M., Klem K. and Honek A. (2005): Weed detection using chlorophyll fluorescence imaging and artificial neural network. 13th European Weed Research Society Symposium, Bari.
  • Kluge A. and Nordmeyer H. (2005): Weed identification with chlorophyll fluorescence image analysis. SSWM Workshop, Bygholm.

2004

  • Sigfridsson K.G.V., Bernat G., Mamedov F. and Styring S. (2004): Molecular interference of Cd2+ with Photosystem II. BBA 1659, pp. 19-31.
  • Roose J.L. and Pakrasi H.B. (2004): Evidence that D1 processing is required for manganese binding and extrinsic protein assembly into Photosystem II. J. Biol. Chem., Vol. 279, No. 44, pp. 45417-45422.
  • Kupper H., Setlik I., Spiller M., Kupper F.C. and Prasil O. (2004): Heavy metal-induced inhibition of photosynthesis: targets of in vivo heavy metal chlorophyll formation1. Journal of Phycology, Vol. 38, No.3, pp. 429-441.
  • Kupper H., Ferimazova N., Setlik I. and Berman-Frank I. (2004): Traffic lights in Trichodesmium: regulation of photosynthesis for nitrogen fixation studied by chlorophyll fluorescence kinetic microscopy. Plant Physiology 135 (4), pp. 2120-2133.
  • Mock T. and Valentin K. (2004): Photosynthesis and cold acclimation: Molecular evidence from a polar diatom. J. Phycol. 40, pp. 732-741.
  • Allahverdiyeva Y., Deak Z., Szilard A., Diner B.A., Nixon P.J. and Vass I. (2004): The function of D1-H332 in Photosystem II electron transport studied by thermoluminescence and chlorophyll fluorescence in site-directed mutants of Synechocystis 6803. European Journal of Biochemistry, Vol. 271, No. 17, pp. 3523-3532.
  • Eriksson M., Moseley J.L., Tottey S., del Campo J.A., Quinn J., Kim Z. and Merchant S. (2004): Genetic dissection of nutritional copper signaling in Chlamydomonas distinguishes regulatory and target genes. Genetics 168, pp. 795-807.
  • Page M.L.D., Hamel P.P., Gabilly S.T., Zegzouti H., Perea J.V., Alonso J.M., Ecker J.R., Theg S.M., Christensen S.K. and Merchan S. (2004): A homolog of prokaryotic thiol-disulfide transporter CadA is required for the assembly of the cytochrome b6f complex in Arabidopsis chloroplasts. J. Biol. Chemistry, Vol. 279, pp. 32474-32482.
  • Gavel, A. and Marsalek, B. (2004): A novel approach for phytotoxicity assessment by CCD fluorescence imaging. Environ. Toxicol. 19 (4), pp. 429-432.
  • Nedbal L. and Whitmarsh J. (2004): Chlorophyll fluorescence imaging of leaves and fruits. In: Chlorophyll Fluorescence: A Signature of Photosynthesis. Papageorgiou G.C. and Govindjee (eds), Kluwer Academic Publishers.
  • Kana R., Spundova M., Ilik P. et al. (2004): Zinc Deficiency Impacts CO2 Assimilation and Disrupts Copper Homeostasis in Chlamydomonas reinhardtii. The Journal of Biological Chemistry 288(15): pp. 10672-10683, doi:10.1074/jbc.M113.455105.
  • Kasinathan V. and Wingler A. (2004): Effect of reduced arginine decarboxylase activity on salt tolerance and on polyamine formation during salt stress in Arabidopsis thaliana. Physiol. Plant., Vol. 121, p. 101.
  • Lezhneva L., Amann K., and Meurer J. (2004): The universally conserved HCF101 protein is involved in assembly of [4Fe-4S]-cluster-containing complexes in Arabidopsis thaliana chloroplasts. Plant Journal, Vol. 37, No. 2, pp. 174-185.
  • Lezhneva L. and Meurer J. (2004): The nuclear factor HCF145 affects chloroplast psaA-psaB-rps14 transcript abundance in Arabidopsis thaliana. Plant Journal, Vol. 38, No. 5, pp, 740-753.
  • Bartak M., Hajek J., Vrablikova H. and Dubova J. (2004): High-light stress and photoprotection in Umbilicaria antarctica monitored by chlorophyll fluorescence imaging and changes in zeaxanthin and glutathione. Plant. Biol., Vol 6, pp. 333-341.
  • DalBosco C., Lezhneva L., Biehl A., Leister D., Strotmann H., Wanner G. and Meurer J. (2004): Inactivation of the chloroplast ATP synthase γ subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. J. Biol. Chem., Vol. 279, No. 2, pp. 1060-1069.
  • Pourtau N., Mares M., Purdy S., Quentin N., Ruel A. and Wingler A. (2004): Interactions of abscisic acid and sugar signalling in the regulation of leaf senescence. Planta 219, pp. 765-772.
  • Wingler A., Mares M. and Pourtau N. (2004): Spatial patterns and metabolic regulation of photosynthetic parameters during leaf senescence. New Phytologist, Vol. 161, Issue 3, p. 781.
  • Schonfeld C., Wobbe L., Borgstadt R., Kienast A., Nixon P.J. and Kruse O. (2004): The nucleus-encoded protein MOC1 is essential for mitochondrial light acclimation in Chlamydomonas reinhardtii. J. Biol. Chem., Vol. 279, No. 48, pp. 50366-50374.
  • Kupper H., Ferimazova N., Setlik I. and Berman-Frank I. (2004): Traffic lights in trichodesmium. Regulation of photosynthesis for nitrogen fixation studied by chlorophyll fluorescence kinetic microscopy. Plant Physiology, Vol. 135, pp. 2120-2133.
  • Walter A., Rascher U. and Osmond C.B. (2004): Transition in photosynthetic parameters of midvein and interveinal regions of leaves and their importance during leaf growth and development. Plant Biology 6, pp. 184-191.

2003

  • Suzuki T., Minagawa J., Tomo T., Sonoike K., Ohta H. and Enami I. (2003): Binding and functional properties of the extrinsic proteins in oxygen-evolving Photosystem II particle from a green alga Chlamydomonas reinhardtii having His-tagged CP47. Plant Cell Physiol. 44, pp. 76-84.
  • Hamel P.P., Dreyfuss B.W., Xie Z., Gabilly S.T. and Merchant S. (2003): Essential histidine and tryptophan residues in CcsA, a system II polytopic cytochrome c biogenesis protein. J. Biol. Chemistry, Vol. 278, No. 4, pp.2593-2603.
  • Gray G.R., Hope B.J., Qin X., Taylor B.G. and Whitehead C.L. (2003): The characterization of photoinhibition and recovery during cold acclimation in Arabidopsis thaliana using chlorophyll fluorescence imaging. Physiol. Plantarum, Vol. 119, Issue 3, p. 365.
  • Keranen M., Aro E.-M. Tyystjarvi E., Nevalainen O. (2003): Automatic plant identification with chlorophyll fluorescence fingerprinting. Precision Agriculture, Vol. 4, No. 1, pp. 53-67.
  • Varsano T. and Kaftan D. (2003): Effects of iron deficiency on thylakoid membrane structure and composition in algae. J. Plant Nutrition., Vol. 26, pp. 2197-2210.
  • Kouril R., Lazar D., Lee H., Jo J. and Naus J. (2003): Moderately elevated temperature eliminates resistance of rice plants with enhanced expression of glutathione reductase to intensive photooxidative stress. Photosynthetica, Vol. 41, No. 4, pp. 571-578.
  • Kromkamp J.C. and Forster R.C. (2003): The use of variable fluorescence measurements in aquatic ecosystems: differences between multiple and single turnover measuring protocols and suggested terminology. Physiol. Plantarum, Vol. 125 (3), pp. 381-391.
  • Sommer F., Hippler M., Biehler K., Fischer N. and Rochaix J.D. (2003): Comparative analysis of photosensitivity in Photosystem I donor and acceptor side mutants of Chlamydomonas reinhardtii. Plant, Cell and Environment, Vol. 26, Issue 11, p. 1881.
  • Küpper H., Šetlík I., Šetliková E., Ferimazova N., Spiller M. and Küpper F.C. (2003): Copper-induced inhibition of photosynthesis: limiting steps of in vivo copper chlorophyll formation in Scenedesmus quadricauda. Functional Plant Biology 30(12), pp. 1187-1196.
  • Halverson K.M. and Barry B.A. (2003): Sucrose and glycerol effects on Photosystem II. Biophysical Journal, Vol. 85, pp. 1317-1325.
  • Sicora C., Mate Z. and Vass I. (2003): The interaction of visible and UV-B light during photodamage and repair of Photosystem II. Photosynthesis Research 75 (2), pp. 127-137.
  • Hamel P.P., Dreyfuss B.W., Xie Z., Gabilly S.T. and Merchant S. (2003): Essential Histidine and Tryptophan Residues in CcsA, a System II Polytopic Cytochrome c Biogenesis Protein. J. Biol. Chem., Vol. 278, Issue 4, pp. 2593-2603.
  • Gray G.R., Hope B.J., Qin X., Taylor B.G. and Whitehead C.L. (2003): The characterization of photoinhibition and recovery during cold acclimation in Arabidopsis thaliana using chlorophyll fluorescence imaging. Physiol Plant 119: 365-375.

2002

  • Kim H.J., Jung J.E. and Lee C.H. (2002): In vivo monitoring of the incorporation of chemicals into cucumber and rice leaves by chlorophyll fluorescence imaging. J. Plant Biotechnol. 4, pp.173-179.
  • Mock T. and Kroon B.M.A. (2002): Photosynthetic energy conversion under extreme conditions: Important role of lipids as structural modulators and energy sink under N-limited growth in Antarctic sea ice diatoms. Phytochemistry 61, pp. 41-51.
  • Torzillo G., Goksan T., Faraloni C., Kopecky J. and Masojidek J. (2002): Interplay between photochemical activities and pigment composition in an outdoor culture of Haematococcus pluvialis during the shift from the green to red stage. J. Appl. Phycol., Vol. 00, pp. 1-10.
  • Komenda J., Lupinkova L. and Kopecky J. (2002): Absence of the psbH gene product destabilizes Photosystem II complex and bicarbonate binding on its acceptor side in Synechocystis PCC 6803. Eur. J. Biochem., Vol. 269, pp. 610-619.
  • Moseley J.L., Allinger T., Herzog S., Hoerth P., Wehinger P., Merchant S. and Hippler M. (2002): Adaptation to Fe-deficiency requires remodeling of the photosynthetic apparatus. The EMBO Journal, Vol. 21, No. 24, pp. 6709-6720.
  • Kana R., Lazar D., Prasil O., Naus J. (2002): Experimental and theoretical studies on the excess capacity of Photosystem II. Photosynthesis Research, Vol. 72, pp. 271-284.
  • Kaftan D., Brumfeld V., Nevo R., Scherz A. and Reich Z. (2002): From chloroplasts to photosystems: In situ scanning force microscopy on intact thylakoid membranes. The EMBO Journal, Vol. 21, No. 22, pp. 6146-6153.
  • Svensson B., Tiede D. and Barry B. (2002): His 190 and Glu 189 provide structural stabilization in Photosystem II. Biochemistry, Vol. 41, pp.11456-11465.
  • Ivleva N.B., Sidoruk K.V., Pakrasi H.B. and Shestakov S.V. (2002): Investigation of the functional role of Ctp proteins in the Cyanobacterium synechocystis sp. PCC 6803. Microbiology, Vol. 71, No. 4, pp. 433-437.
  • Lindell D., Erdner D., Marie D., Prasil O., Koblizek M., LeGall F., Rippka R., Partensky F., Scanlan D.J. and Post A.F. (2002): Nitrogen stress response of Prochlorococcus strain PCC9511 (Oxyphotobacteria) involves contrasting regulation of ntcA and amt1. J. Phycol. 38, pp. 1113-1124.
  • Nedbal L. and Brezina V. (2002): Complex metabolic oscillations in plants forced by harmonic irradiance. Biophys. J., Vol. 83, pp. 2180-2189.
  • Ferimazova N., Kuepper H., Nedbal L. and Trtilek M. (2002): New insights into photosynthetic oscillations revealed by two-dimensional microscopic measurements of chlorophyll fluorescence kinetics in intact leaves and isolated protoplasts. Photochem. Photobiology, Vol. 76, pp. 501-508.

2001

  • Berman-Frank I., Lungren P., Chen Y.-B., Kuepper H., Kolber Z., Bergman B. and Falkowski P. (2001): Segregation of nitrogen fixation and oxygenic photosynthesis in the marine cyanobacterium Trichodesmium. Science 294, pp.1534-1537.
  • Koblizek M., Kaftan D. and Nedbal L. (2001): On the relationship between the non-photochemical quenching of the chlorophyll fluorescence and the Photosystem II light harvesting efficiency. A repetitive flash fluorescence induction study. Photosynthesis Research 68, pp. 141-152.
  • Regel R.E., Ivleva N.B., Zer H., Meurer J., Shestakov S.V., Herrmann R.G., Pakrasi H.B. and Ohad I. (2001): Deregulation of electron flow within Photosystem II in the absence of the PsbJ protein. J. Biol. Chemistry, Vol. 276, pp. 41473-41478.
  • Steglich C., Behrenfeld M., Koblizek M., Claustre H., Penno S., Prasil O., Pertensky F. and Hess W.R. (2001): Nitrogen deprivation strongly affects Photosystem II but not phycoerythrin level in the divinyl-chlorophyll b-containing cyanobacterium Prochlorococcus marinus. Biochimica et Biophisica Acta, Vol. 1503, pp. 341-349.
  • Bertrand M., Schoefs B., Siffel P., Rohacek K. and Molnar I. (2001): Cadmium inhibits epoxidation of diatoxanthin to diadinoxanthin in the xanthophyll cycle of the marine diatom Phaeodactylum tricornutum. FEBS Letters 508, pp. 153-156.
  • Hermans C., Chaerle L., Rodriguez R.M., VanDer Straeten D., Strasser R.J. and Delhaye J.P. (2001): Biosensing methods to assess environmental stress encountered by sugar beet (Beta vulgaris L). Proceedings of the 64th IIRB Congress, 26-27 June 2001, Bruges, Belgium.

2000

  • Bartak M., Hajek J. and Gloser J. (2000): Heterogeneity of chlorophyll fluorescence over thalli of several foliose macrolichens exposed to adverse environmental factors: Interspecific differences as related to thallus hydration and high irradiance. Photosynthetica 38, pp. 531-537.
  • Kuepper H., Setlik I., Trtilek M. and Nedbal L. (2000): A microscope for two-dimensional measurements of in vivo chlorophyll fluorescence kinetics using pulsed measuring radiation, continuous actinic radiation, and saturating flashes. Photosynthetica 38, pp.553-570.
  • Govindjee and Nedbal L. (2000): The chlorophyll fluorescence imaging and its application in plant science and technology. Photosynthetica 38, pp. 481-482.
  • Nedbal L., Soukupova J., Whitmarsh J. and Trtilek M. (2000): Postharvest imaging of chlorophyll fluorescence from lemons can be used to predict fruit quality. Photosynthetica 38, pp. 571-579.
  • Nedbal L., Soukupova J., Kaftan D., Whitmarsh J., Trtilek M. (2000): Kinetic imaging of chlorophyll fluorescence using modulated light. Photosynthesis Research 66, pp. 3-12.
  • Zak E. and Pakrasi H.B. (2000): The BtpA protein stabilizes the reaction center proteins of Photosystem I in the cyanobacterium Synechocystis sp. PCC 6803 at low temperature. Plant Physiology, Vol. 123, pp. 215-222.
  • Skotnica J., Matouskova M., Naus J., Lazar D. and Dvorak L. (2000): Thermoluminescence and fluorescence study of changes in Photosystem II photochemistry in desiccating barley leaves. Photosynthesis Research 65 (1), pp. 29-40.
  • Strasser R.J., Srivastava A., Tsimili-Michael M. (2000): The fluorescence transient as a tool to characterize and screen photosynthetic samples. In: Probing Photosynthesis: Mechanism, Regulation and Adaptation (M. Yunus, U. Pathre and P. Mohanty, eds.), Chapter 25, pp 445-483.
  • Ohkawa H., Pakrasi H.B. and Ogawa T. (2000): Two types of functionally distinct NAD(P)H dehydrogenases in Synechosystis sp. strain PCC6803. J. Biol. Chemistry, Vol. 275, pp. 13630-13634.

1999

  • Dijkman N., Kaftan D., Trtilek M. and Nedbal L. (1999): Measurements of phytoplankton of sub-nanomolar chlorophyll concentration by a modified double-modulation fluorometer. Photosynthetica 37(2), pp.249-254.
  • Kaftan D., Meszaros T., Whitmarsh J., Nedbal L. (1999): Characterization of Photosystem II activity and heterogeneity during the cell cycle of the green alga Scenedesmus quadricauda. Plant Physiol. 120, pp. 433-441.
  • Koblizek M., Ciscato M., Komenda J., Kopecky J., Siffel P., Masojidek J. (1999): Photo adaptation in the green alga Spongiochloris sp. A three-fluorometer study. Photosynthetica 37, pp. 307-323.
  • Meetam M., Keren N., Ohad I., Pakrasi H.B. (1999): The PsbY protein is not essential for oxygenic photosynthesis in the cyanobacterium Synechocystis sp. PCC 6803. Plant Physiology 121, pp.1267-1272.
  • Nedbal L., Trtilek M., Kaftan D. (1999): Flash fluorescence induction: a novel method to study regulation of Photosystem II. J. Photochem. Photobiol., Vol. 48, pp. 154-157.
  • Ritz M., Neverov K.V., Etienne A.-L. (1999): DpH-dependent fluorescence quenching and its photoprotective role in the unicellular red alga Rhodella violacea. Photosynthetica 37, pp. 267-280.
  • Cordier H., Karst F. and Berges T. (1999): Heterologous expression in Saccharomyces cerevisiae of an Arabidopsis thaliana cDNA encoding mevalonate diphosphate decarboxylase. Plant Mol. Biol. Vol. 39, No. 5, pp. 953-967.
  • Setlikova E., Sofrova D., Prasil O., Budac P., Koblizek M. and Setlik I. (1999): Integrity and activity of Photosystem 2 complexes isolated from the thermophilic cyanobacterium Synochococcus elongatus using various detergents. Photosynthetica 37, pp. 183-200.
  • Soukupova J., Lukavska A., Lukavsky J. and Nedbal L. (1999): Sensitivity of the algal biotest ISO 10253 to the Photosystem 2 herbicides in seawater. Photosynthetica 37, pp. 209-216.
  • Urban O., Trtilek M., Feild T. and Nedbal L. (1999): Single-turnover flashes to saturate QA reduction in a leaf were generated by the light-emitting diodes from a double modulation kinetic chlorophyll fluorometer. Photosynthetica 37, pp. 201-207.
  • Heck D.A., Miles D., and Chitnis P.R. (1999): Characterization of two photosynthetic mutants of maize1. Plant Physiol., Vol. 120, pp. 1129-1136.

1998

  • Feild T., Nedbal L. and Ort D.R. (1998): Non-photochemical reduction of the plastoquinone pool in sunflower leaves originates from chlororespiration. Plant Physiol., Vol. 116, pp.1209-1218.
  • Kaftan D., Trtilek M., Kroon B. and Nedbal L. (1998): Fast-response double-modulation fluorometer. In Photosynthesis: Mechanisms and Effects (Garab G., ed.), Vol. V, pp. 4297-4300, Kluwer, Dordrecht.
  • Meszaros T., Kaftan D., Prasil O., Setlik I., Whitmarsh J. and Nedbal L. (1998): Photosynthetic activity during the cell cycle of the green alga Scenedesmus quadricauda. In Photosynthesis: Mechanisms and Effects (Garab G., ed.), Vol. II, pp. 1165-1168, Kluwer, Dordrecht.

1997

  • Trtilek M., Kramer D.M., Koblizek M. and Nedbal L. (1997): Dual-modulation LED kinetic fluorometer. J. Lumin. 72-74, pp.597-599.
  • Koblizek M., Marek M., Komenda J. and Nedbal L. (1997): Light adaptation in the cyanobacterium Synechococcus sp. PCC7942 measured by the dual-modulation fluorometer. J. Lumin. 72-74, pp. 589-590.

1995

  • Tichy V., Paulson M., Grobbelaar J.U., Xiong F. and Nedbal L. (1995): Photosynthesis, growth and photoinhibition of microalgae exposed to intermittent light. In Photosynthesis: From Light to Boisphere (Mathis P., ed.), Vol. V, pp. 1029-1032, Kluwer, Dordrecht.
  • Grobbelaar J.U., Nedbal L., Tichy V. and Setlík I. (1995): Variation in some photosynthetic characteristics of microalgae cultured in outdoor thin-layered sloping reactors. J. Appl. Phycol. 7, pp.175-184.
  • Nedbal L. and Trtilek M. (1995): Diffuse-light dual-modulation fluorometer: monitoring of electron transfer reactions in Synechococcus elongatus exposed to intermittent light. In Photosynthesis: From Light to Biosphere (Mathis P., ed.), Vol. V, pp. 813-816, Kluwer, Dordrecht.